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Staying Ahead of Pertussis

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Four methods of lab testing for pertussis infection are polymerase chain reaction (PCR), direct fluorescent antibody (DFA) testing, serologic testing, and culture (TABLE 3).17-19 The sensitivity of these tests is as follows: PCR, 90% to 95%; DFA, 50% to 60%; serologic testing, 70% to 80%; and culture, 50% to 70%. The specificity is: PCR, 95% to 98%; DFA, 90% to 100%; serologic testing, 90% to 100%; and culture, 100%.


PCR
is the preferred method because of its rapid turnaround and fairly high sensitivity. The reliability of PCR decreases, however, for a patient who’s had a cough for more than 2 weeks because the individual may have transitioned to the convalescent phase, when less bacterial DNA remain.

Results from DFA testing also are rapidly available, but the need for specialized equipment and a well-trained examiner of the specimen limits widespread use of this test. It also is not particularly sensitive for pertussis.

Serologic testing is less reliable in patients who have received an acellular pertussis vaccine and is not helpful in the first few weeks of infection.

The sensitivity of culture is best if the sample is collected appropriately (more on this in a bit) and within the first 2 weeks of symptoms (catarrhal stage). Culture is also very specific.

Given the strengths and weakness of the different tests, an acceptable method of laboratory confirmation is to obtain PCR and/or culture within the first 2 weeks of symptoms in all age groups.17-20 Testing after 2 weeks should include a combination of PCR and serology.17 It is essential that the clinical specimen used for PCR or culture testing for pertussis is properly collected. (See “Collecting a swab for pertussis testing” below.21)

COLLECTING A SWAB FOR PERTUSSIS TESTING
The illustration below shows the correct swab and sampling method. Swab tips may be polyester (such as Dacron or rayon) or they may be nylon-flocked. Cotton-tipped or
calcium alginate swabs are not acceptable because the residue will inhibit DNA assays.21
The specimen must be obtained from the posterior nasopharynx and not the nares or oropharynx. The Centers for Disease Control and Prevention offers a video that demonstrates how to properly collect a specimen for testing at http://www.cdc.gov/pertussis/clinical/diagnostic-testing/specimen-collection.html.

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